Publications of Center Personnel 2005

1:  Seo J, Gordish-Dressman H, Hoffman EP. 
 An interactive power analysis tool for microarray hypothesis testing and
generation.
Bioinformatics. 2006 Jan 17; [Epub ahead of print] 
PMID: 16418236 [PubMed - as supplied by publisher]

2:  Melcon G, Kozlov S, Cutler DA, Sullivan T, Hernandez L, Zhao P, Mitchell S,
Nader G, Bakay M, Rottman JN, Hoffman EP, Stewart CL. 
 Loss of emerin at the nuclear envelope disrupts the Rb1/E2F and MyoD pathways
during muscle regeneration.
Hum Mol Genet. 2006 Jan 10; [Epub ahead of print] 
PMID: 16403804 [PubMed - as supplied by publisher]

3:  Wang Z, Wang Y, Xuan J, Dong Y, Bakay M, Feng Y, Clarke R, Hoffman EP. 
 Optimized multilayer perceptrons for molecular classification and diagnosis
using genomic data.
Bioinformatics. 2006 Jan 10; [Epub ahead of print] 
PMID: 16403791 [PubMed - as supplied by publisher]

4:  Byrnes KR, Garay J, Di Giovanni S, De Biase A, Knoblach SM, Hoffman EP,
Movsesyan V, Faden AI. 
 Expression of two temporally distinct microglia-related gene clusters after
spinal cord injury.
Glia. 2006 Mar;53(4):420-33. 
PMID: 16345062 [PubMed - in process]

5:  Hamed SA, Hoffman EP. 
 Automated sequence screening of the entire dystrophin cdna in Duchenne
dystrophy: Point mutation detection.
Am J Med Genet B Neuropsychiatr Genet. 2006 Jan 5;141(1):44-50. 
PMID: 16331671 [PubMed - in process]

6:  Zhao P, Caretti G, Mitchell S, McKeehan WL, Boskey AL, Pachman LM,
Sartorelli V, Hoffman EP. 
 Fgfr4 is required for effective muscle regeneration in vivo. Delineation of a
MyoD-Tead2-Fgfr4 transcriptional pathway.
J Biol Chem. 2006 Jan 6;281(1):429-38. Epub 2005 Nov 2. 
PMID: 16267055 [PubMed - in process]

7:  Urso ML, Clarkson PM, Hittel D, Hoffman EP, Thompson PD. 
 Changes in ubiquitin proteasome pathway gene expression in skeletal muscle with
exercise and statins.
Arterioscler Thromb Vasc Biol. 2005 Dec;25(12):2560-6. Epub 2005 Oct 13. 
PMID: 16224050 [PubMed - in process]

8:  Hulver MW, Berggren JR, Carper MJ, Miyazaki M, Ntambi JM, Hoffman EP,
Thyfault JP, Stevens R, Dohm GL, Houmard JA, Muoio DM. 
 Elevated stearoyl-CoA desaturase-1 expression in skeletal muscle contributes to
abnormal fatty acid partitioning in obese humans.
Cell Metab. 2005 Oct;2(4):251-61. 
PMID: 16213227 [PubMed - in process]

9:  Molon A, Di Giovanni S, Hathout Y, Joanne N, Hoffman EP. 
 Functional recovery of glycine receptors in spastic murine model of startle
disease.
Neurobiol Dis. 2005 Sep 21; [Epub ahead of print] 
PMID: 16182553 [PubMed - as supplied by publisher]

10:  Vanderver A, Schiffmann R, Timmons M, Kellersberger KA, Fabris D, Hoffman
EP, Maletkovic J, Hathout Y. 
 Decreased asialotransferrin in cerebrospinal fluid of patients with
childhood-onset ataxia and central nervous system hypomyelination/vanishing
white matter disease.
Clin Chem. 2005 Nov;51(11):2031-42. Epub 2005 Sep 9. 
PMID: 16155092 [PubMed - indexed for MEDLINE]

11:  Chen YW, Nagaraju K, Bakay M, McIntyre O, Rawat R, Shi R, Hoffman EP. 
 Early onset of inflammation and later involvement of TGFbeta in Duchenne
muscular dystrophy.
Neurology. 2005 Sep 27;65(6):826-34. Epub 2005 Aug 10. 
PMID: 16093456 [PubMed - in process]

12:  Gordon ES, Gordish Dressman HA, Hoffman EP. 
 The genetics of muscle atrophy and growth: the impact and implications of
polymorphisms in animals and humans.
Int J Biochem Cell Biol. 2005 Oct;37(10):2064-74. Review. 
PMID: 15967701 [PubMed - indexed for MEDLINE]

13:  Hamed S, Sutherland-Smith A, Gorospe J, Kendrick-Jones J, Hoffman E. 
 DNA sequence analysis for structure/function and mutation studies in Becker
muscular dystrophy.
Clin Genet. 2005 Jul;68(1):69-79. 
PMID: 15952989 [PubMed - indexed for MEDLINE]

14:  Hubal MJ, Gordish-Dressman H, Thompson PD, Price TB, Hoffman EP,
Angelopoulos TJ, Gordon PM, Moyna NM, Pescatello LS, Visich PS, Zoeller RF, Seip
RL, Clarkson PM. 
 Variability in muscle size and strength gain after unilateral resistance
training.
Med Sci Sports Exerc. 2005 Jun;37(6):964-72. 
PMID: 15947721 [PubMed - indexed for MEDLINE]

15:  Gordon ES, Gordish-Dressman HA, Devaney J, Clarkson P, Thompson P, Gordon
P, Pescatello LS, Hubal MJ, Pistilli EE, Gianetti G, Kelsey B, Hoffman EP. 
 Nondisease genetic testing: reporting of muscle SNPs shows effects on
self-concept and health orientation scales.
Eur J Hum Genet. 2005 Sep;13(9):1047-54. 
PMID: 15944650 [PubMed - indexed for MEDLINE]

16:  De Biase A, Knoblach SM, Di Giovanni S, Fan C, Molon A, Hoffman EP, Faden
AI. 
 Gene expression profiling of experimental traumatic spinal cord injury as a
function of distance from impact site and injury severity.
Physiol Genomics. 2005 Aug 11;22(3):368-81. Epub 2005 Jun 7. 
PMID: 15942019 [PubMed - in process]

17:  Fischer MD, Budak MT, Bakay M, Gorospe JR, Kjellgren D, Pedrosa-Domellof F,
Hoffman EP, Khurana TS. 
 Definition of the unique human extraocular muscle allotype by expression
profiling.
Physiol Genomics. 2005 Aug 11;22(3):283-91. Epub 2005 Apr 26. 
PMID: 15855387 [PubMed - in process]

18:  Hittel DS, Hathout Y, Hoffman EP, Houmard JA. 
 Proteome analysis of skeletal muscle from obese and morbidly obese women.
Diabetes. 2005 May;54(5):1283-8. 
PMID: 15855311 [PubMed - indexed for MEDLINE]

19:  Clarkson PM, Hoffman EP, Zambraski E, Gordish-Dressman H, Kearns A, Hubal
M, Harmon B, Devaney JM. 
 ACTN3 and MLCK genotype associations with exertional muscle damage.
J Appl Physiol. 2005 Aug;99(2):564-9. Epub 2005 Apr 7. 
PMID: 15817725 [PubMed - indexed for MEDLINE]

20:  Wu FF, Gordon E, Hoffman EP, Cannon SC. 
 A C-terminal skeletal muscle sodium channel mutation associated with myotonia
disrupts fast inactivation.
J Physiol. 2005 Jun 1;565(Pt 2):371-80. Epub 2005 Mar 17. 
PMID: 15774523 [PubMed - indexed for MEDLINE]

21:  Fisher I, Abraham D, Bouri K, Hoffman EP, Muntoni F, Morgan J. 
 Prednisolone-induced changes in dystrophic skeletal muscle.
FASEB J. 2005 May;19(7):834-6. Epub 2005 Feb 25. Erratum in: FASEB J. 2005
May;19(7):1 p following 836. Hoffmann, Eric P [corrected to Hoffman, Eric P]. 
PMID: 15734791 [PubMed - indexed for MEDLINE]

22:  Clarkson PM, Devaney JM, Gordish-Dressman H, Thompson PD, Hubal MJ, Urso M,
Price TB, Angelopoulos TJ, Gordon PM, Moyna NM, Pescatello LS, Visich PS,
Zoeller RF, Seip RL, Hoffman EP. 
 ACTN3 genotype is associated with increases in muscle strength in response to
resistance training in women.
J Appl Physiol. 2005 Jul;99(1):154-63. Epub 2005 Feb 17. 
PMID: 15718405 [PubMed - indexed for MEDLINE]

23:  Nazarian J, Bouri K, Hoffman EP. 
 Intracellular expression profiling by laser capture microdissection: three
novel components of the neuromuscular junction.
Physiol Genomics. 2005 Mar 21;21(1):70-80. Epub 2004 Dec 28. 
PMID: 15623565 [PubMed - in process]

24:  Di Giovanni S, Faden AI, Yakovlev A, Duke-Cohan JS, Finn T, Thouin M,
Knoblach S, De Biase A, Bregman BS, Hoffman EP. 
 Neuronal plasticity after spinal cord injury: identification of a gene cluster
driving neurite outgrowth.
FASEB J. 2005 Jan;19(1):153-4. Epub 2004 Nov 2. 
PMID: 15522907 [PubMed - indexed for MEDLINE]

25:  Di Giovanni S, De Biase A, Yakovlev A, Finn T, Beers J, Hoffman EP, Faden
AI. 
 In vivo and in vitro characterization of novel neuronal plasticity factors
identified following spinal cord injury.
J Biol Chem. 2005 Jan 21;280(3):2084-91. Epub 2004 Nov 1. 
PMID: 15522871 [PubMed - indexed for MEDLINE]

26:  Hittel DS, Kraus WE, Tanner CJ, Houmard JA, Hoffman EP. 
 Exercise training increases electron and substrate shuttling proteins in muscle
of overweight men and women with the metabolic syndrome.
J Appl Physiol. 2005 Jan;98(1):168-79. Epub 2004 Sep 3. 
PMID: 15347626 [PubMed - indexed for MEDLINE]

Terence Partridge Lab

27:  Collins CA, Partridge TA. 
 Self-renewal of the adult skeletal muscle satellite cell.
Cell Cycle. 2005 Oct;4(10):1338-41. Epub 2005 Oct 23. 
PMID: 16177569 [PubMed - in process]

28:  Collins CA, Olsen I, Zammit PS, Heslop L, Petrie A, Partridge TA, Morgan
JE. 
 Stem cell function, self-renewal, and behavioral heterogeneity of cells from
the adult muscle satellite cell niche.
Cell. 2005 Jul 29;122(2):289-301. 
PMID: 16051152 [PubMed - indexed for MEDLINE]

29:  Kodama T, Tan PH, Offiah I, Partridge T, Cook T, George AJ, Blomley MJ. 
 Delivery of oligodeoxynucleotides into human saphenous veins and the adjunct
effect of ultrasound and microbubbles.
Ultrasound Med Biol. 2005 Dec;31(12):1683-91. 
PMID: 16344130 [PubMed - in process]

30:  Montarras D, Morgan J, Collins C, Relaix F, Zaffran S, Cumano A, Partridge
T, Buckingham M. 
 Direct isolation of satellite cells for skeletal muscle regeneration.
Science. 2005 Sep 23;309(5743):2064-7. Epub 2005 Sep 1. 
PMID: 16141372 [PubMed - indexed for MEDLINE]

31:  Morrison J, Palmer DB, Cobbold S, Partridge T, Bou-Gharios G. 
 Effects of T-lymphocyte depletion on muscle fibrosis in the mdx mouse.
Am J Pathol. 2005 Jun;166(6):1701-10. 
PMID: 15920155 [PubMed - indexed for MEDLINE]

Diana Escolar Lab

32:  Rocha CT, Escolar DM. 
 Update on diagnosis and treatment of hereditary and acquired polyneuropathies
in childhood.
Suppl Clin Neurophysiol. 2004;57:255-71. Review. No abstract available. 
PMID: 16106624 [PubMed - indexed for MEDLINE]

33:  Escolar DM, Buyse G, Henricson E, Leshner R, Florence J, Mayhew J,
Tesi-Rocha C, Gorni K, Pasquali L, Patel KM, McCarter R, Huang J, Mayhew T,
Bertorini T, Carlo J, Connolly AM, Clemens PR, Goemans N, Iannaccone ST,
Igarashi M, Nevo Y, Pestronk A, Subramony SH, Vedanarayanan VV, Wessel H; CINRG
Group. 
 CINRG randomized controlled trial of creatine and glutamine in Duchenne
muscular dystrophy.
Ann Neurol. 2005 Jul;58(1):151-5. 
PMID: 15984021 [PubMed - indexed for MEDLINE]

Kanneboyina Nagaraju Lab

34:  Nagaraju K. 
 Role of major histocompatibility complex class I molecules in autoimmune
myositis.
Curr Opin Rheumatol. 2005 Nov;17(6):725-30. Review. 
PMID: 16224250 [PubMed - indexed for MEDLINE]

35:  Nagaraju K, Casciola-Rosen L, Lundberg I, Rawat R, Cutting S, Thapliyal R,
Chang J, Dwivedi S, Mitsak M, Chen YW, Plotz P, Rosen A, Hoffman E, Raben N. 
 Activation of the endoplasmic reticulum stress response in autoimmune myositis:
potential role in muscle fiber damage and dysfunction.
Arthritis Rheum. 2005 Jun;52(6):1824-35. 
PMID: 15934115 [PubMed - indexed for MEDLINE]

36:  Casciola-Rosen L, Nagaraju K, Plotz P, Wang K, Levine S, Gabrielson E,
Corse A, Rosen A. 
 Enhanced autoantigen expression in regenerating muscle cells in idiopathic
inflammatory myopathy.
J Exp Med. 2005 Feb 21;201(4):591-601. 
PMID: 15728237 [PubMed - indexed for MEDLINE]

37:  Raben N, Fukuda T, Gilbert AL, de Jong D, Thurberg BL, Mattaliano RJ,
Meikle P, Hopwood JJ, Nagashima K, Nagaraju K, Plotz PH. 
 Replacing acid alpha-glucosidase in Pompe disease: recombinant and transgenic
enzymes are equipotent, but neither completely clears glycogen from type II
muscle fibers.
Mol Ther. 2005 Jan;11(1):48-56. 
PMID: 15585405 [PubMed - indexed for MEDLINE]

11:  Chen YW, Nagaraju K, Bakay M, McIntyre O, Rawat R, Shi R, Hoffman EP. 
 Early onset of inflammation and later involvement of TGFbeta in Duchenne
muscular dystrophy.
Neurology. 2005 Sep 27;65(6):826-34. Epub 2005 Aug 10. 
PMID: 16093456 [PubMed - in process]

Yi-Wen Chen Lab

38:  Liu PC, Chen YW, Centeno JA, Quezado M, Lem K, Kaler SG. 
 Downregulation of myelination, energy, and translational genes in Menkes
disease brain.
Mol Genet Metab. 2005 Aug;85(4):291-300. 
PMID: 15923132 [PubMed - indexed for MEDLINE]

11:  Chen YW, Nagaraju K, Bakay M, McIntyre O, Rawat R, Shi R, Hoffman EP. 
 Early onset of inflammation and later involvement of TGFbeta in Duchenne
muscular dystrophy.
Neurology. 2005 Sep 27;65(6):826-34. Epub 2005 Aug 10. 
PMID: 16093456 [PubMed - in process]